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Coupling models of cattle and farms with models of badgers for predicting the dynamics of bovine tuberculosis (TB)

机译:牛与农场的耦合模型与獾的模型   预测牛结核病(TB)的动态

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摘要

Bovine TB is a major problem for the agricultural industry in severalcountries. TB can be contracted and spread by species other than cattle andthis can cause a problem for disease control. In the UK and Ireland, badgersare a recognised reservoir of infection and there has been substantialdiscussion about potential control strategies. We present a coupling ofindividual based models of bovine TB in badgers and cattle, which aims tocapture the key details of the natural history of the disease and of bothspecies at approximately county scale. The model is spatially explicit itfollows a very large number of cattle and badgers on a different grid size foreach species and includes also winter housing. We show that the model canreplicate the reported dynamics of both cattle and badger populations as wellas the increasing prevalence of the disease in cattle. Parameter space used asinput in simulations was swept out using Latin hypercube sampling andsensitivity analysis to model outputs was conducted using mixed effect models.By exploring a large and computationally intensive parameter space we show thatof the available control strategies it is the frequency of TB testing andwhether or not winter housing is practised that have the most significanteffects on the number of infected cattle, with the effect of winter housingbecoming stronger as farm size increases. Whether badgers were culled or notexplained about 5%, while the accuracy of the test employed to detect infectedcattle explained less than 3% of the variance in the number of infected cattle.
机译:牛结核病是几个国家农业生产的主要问题。结核病可以通过牛以外的其他物种传染和传播,这可能导致疾病控制问题。在英国和爱尔兰,badge是公认的感染源,因此人们对潜在的控制策略进行了大量讨论。我们提出了badge和牛的牛结核个体模型的耦​​合,其目的是在大约县范围内捕获该疾病自然史和两种物种的关键细节。该模型在空间上是显式的,它针对每个物种在不同的网格大小上跟踪了大量的牛和rs,还包括冬季住房。我们显示该模型可以复制牛和badge种群的动态报告,以及该病在牛中的流行率增加。通过使用拉丁超立方体采样清除了用作模拟输入的参数空间,并使用混合效应模型对模型输出进行了敏感性分析。通过探索大型且计算密集的参数空间,我们表明可用的控制策略是结核病检测的频率以及是否并非采用对感染牛的数量影响最大的冬季住房,随着农场规模的扩大,冬季住房的影响会越来越强。 rs是否被剔除的原因约为5%,而用来检测被感染的牛的测试的准确性解释了被感染牛数量变化的不足3%。

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